If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ), 'gf_id' => 'HOM05D000944', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000944' ), 'data_identifier' => 'HOM05D000944', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000944', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '636', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p15910' => 'bna', 'A04p12260' => 'bna', 'A04p12320' => 'bna', 'A07p10920' => 'bna', 'A07p10930' => 'bna', 'A07p13040' => 'bna', 'A08p25300' => 'bna', 'A09p03980' => 'bna', 'A09p37180' => 'bna', 'Aa31LG2G4100' => 'aar', 'Aa31LG6G6390' => 'aar', 'Aa31LG7G8420' => 'aar', 'Aa31LG9G16520' => 'aar', 'Aa31sc207G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1456' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4220' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2161' => 'aag', 'Actinidia04869' => 'ach', 'Actinidia06103' => 'ach', 'Actinidia12301' => 'ach', 'Actinidia12302' => 'ach', 'Actinidia17564' => 'ach', 'Actinidia19933' => 'ach', 'Actinidia26234' => 'ach', 'Actinidia31963' => 'ach', 'Actinidia33223' => 'ach', 'Actinidia33228' => 'ach', 'Ah.01g002190' => 'amhyb', 'Ah.02g113740' => 'amhyb', 'Ah.03g134720' => 'amhyb', 'Ah.11g048220' => 'amhyb', 'AL1G39050' => 'aly', 'AL1G42860' => 'aly', 'AL5G19000' => 'aly', 'AL5G21090' => 'aly', 'AL6G40900' => 'aly', 'AL7G50680' => 'aly', 'AL7G50800' => 'aly', 'Aqoxy3G03487' => 'aox', 'Aqoxy4G01903' => 'aox', 'Aqoxy5G01830' => 'aox', 'Aqoxy5G01969' => 'aox', 'Aqoxy7G01351' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01W0YK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LD7NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.980YXK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALS9GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C28NU7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2I0TN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRGH5H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FQKP3I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FR9TUN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G2X0JI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H925DL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9PNM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR9ZE8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K2NHVE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFUT9W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LDG5Z4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RPVK1C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T4811Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TS8P9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UAI9RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIHA4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XIC98H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y6RVYE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHVZ7A' => 'arhy', 'AT1G26670' => 'ath', 'AT1G29150' => 'ath', 'AT3G29100' => 'ath', 'AT5G39510' => 'ath', 'AT5G39630' => 'ath', 'ATR0166G001' => 'atr', 'ATR0394G001' => 'atr', 'ATR0481G014' => 'atr', 'ATR0715G001' => 'atr', 'ATR0807G184' => 'atr', 'ATR1139G001' => 'atr', 'ATR1154G055' => 'atr', 'Atru.chr11.1721' => 'acertr', 'Atru.chr6.239' => 'acertr', 'Atru.chr6.951' => 'acertr', 'Atru.chr8.324' => 'acertr', 'Atru.chr9.337' => 'acertr', 'AUR62005845' => 'cqu', 'AUR62007205' => 'cqu', 'AUR62008460' => 'cqu', 'AUR62015075' => 'cqu', 'AUR62017532' => 'cqu', 'AUR62018796' => 'cqu', 'AUR62018797' => 'cqu', 'AUR62021635' => 'cqu', 'AUR62032837' => 'cqu', 'AUR62038112' => 'cqu', 'AUR62038610' => 'cqu', 'AUR62039252' => 'cqu', 'AUR62043075' => 'cqu', 'BcaB02g07978' => 'bca', 'BcaB03g13903' => 'bca', 'BcaB03g14083' => 'bca', 'BcaB04g19504' => 'bca', 'BcaB05g24225' => 'bca', 'BcaB05g24455' => 'bca', 'BcaB06g26500' => 'bca', 'BcaB06g27318' => 'bca', 'BcaB06g27339' => 'bca', 'BcaB07g32499' => 'bca', 'BcaC03g15084' => 'bca', 'BcaC04g22016' => 'bca', 'BcaC04g23846' => 'bca', 'BcaC05g26931' => 'bca', 'BcaC06g31723' => 'bca', 'BcaC06g35130' => 'bca', 'BcaC06g35404' => 'bca', 'BcaC08g45411' => 'bca', 'BolC2t08712H' => 'bol', 'BolC3t19811H' => 'bol', 'BolC4t26177H' => 'bol', 'BolC5t31505H' => 'bol', 'BolC6t38205H' => 'bol', 'BolC7t42152H' => 'bol', 'BolC9t53351H' => 'bol', 'BolC9t55373H' => 'bol', 'BraA02t06650Z' => 'bra', 'BraA04t16890Z' => 'bra', 'BraA04t16896Z' => 'bra', 'BraA07t28881Z' => 'bra', 'BraA07t29075Z' => 'bra', 'BraA08t34481Z' => 'bra', 'BraA09t36035Z' => 'bra', 'BraA09t39234Z' => 'bra', 'C02p26380' => 'bna', 'C03p75540' => 'bna', 'C04p30940' => 'bna', 'C04p45940' => 'bna', 'C05p27840' => 'bna', 'C05p55660' => 'bna', 'C06p17870' => 'bna', 'C06p30420' => 'bna', 'C07p16550' => 'bna', 'C07p19490' => 'bna', 'C09p04200' => 'bna', 'C09p24590' => 'bna', 'CAN.G479.62' => 'can', 'CAN.G964.25' => 'can', 'CAN.G964.26' => 'can', 'CAN.G964.27' => 'can', 'CAN.G964.29' => 'can', 'CANSAT56G0509' => 'cansat', 'CANSAT56G0639' => 'cansat', 'CANSAT64G1263' => 'cansat', 'CARHR025290' => 'chi', 'CARHR028460' => 'chi', 'CARHR152300' => 'chi', 'CARHR262820' => 'chi', 'Carub.0001s2435' => 'cru', 'Carub.0001s2735' => 'cru', 'Carub.0005s0783' => 'cru', 'Carub.0007s3644' => 'cru', 'Ca_04855_v3' => 'car', 'Ca_04877_v3' => 'car', 'Ca_06793_v3' => 'car', 'Ca_12828_v3' => 'car', 'Ca_12830_v3' => 'car', 'Ca_14692_v3' => 'car', 'Ca_15634_v3' => 'car', 'Ca_30948_v3' => 'car', 'CBR_g1021' => 'cbr', 'CBR_g22935' => 'cbr', 'Cc04_g14980' => 'ccan', 'Cc07_g03640' => 'ccan', 'Cc11_g12590' => 'ccan', 'Cc11_g12620' => 'ccan', 'CDE04G1346' => 'cde', 'CDE04G3024' => 'cde', 'CDE05G1276' => 'cde', 'CDE05G3082' => 'cde', 'CDE10G0402' => 'cde', 'CDE10G1024' => 'cde', 'Cfa007591' => 'cfa', 'Cfa007630' => 'cfa', 'Cfa008931' => 'cfa', 'Cfa008955' => 'cfa', 'Cfa016533' => 'cfa', 'Cfa025192' => 'cfa', 'Cfa025291' => 'cfa', 'Ciclev10008409m.g' => 'ccl', 'Ciclev10012700m.g' => 'ccl', 'Ciclev10022140m.g' => 'ccl', 'Ciclev10032709m.g' => 'ccl', 'CiPaw.03G023600' => 'cil', 'CiPaw.04G014900' => 'cil', 'CiPaw.06G088400' => 'cil', 'CiPaw.06G088500' => 'cil', 'CiPaw.12G072100' => 'cil', 'ClCG02G020220' => 'cla', 'ClCG07G003550' => 'cla', 'ClCG09G017970' => 'cla', 'ClCG10G015280' => 'cla', 'COL.COLO4_12227' => 'col', 'COL.COLO4_27973' => 'col', 'COL.COLO4_27974' => 'col', 'COL.COLO4_27977' => 'col', 'COL.COLO4_36942' => 'col', 'Cpa.g.sc1.64' => 'cpa', 'Cpa.g.sc13.295' => 'cpa', 'Cpa.g.sc14.118' => 'cpa', 'Cpa.g.sc83.90' => 'cpa', 'Cre02.g097650' => 'cre', 'Cre13.g577500' => 'cre', 'CsaV3_3G041240' => 'csa', 'CsaV3_5G008320' => 'csa', 'CsaV3_5G038260' => 'csa', 'CsaV3_6G016920' => 'csa', 'CSS0001706' => 'camsi', 'CSS0009271' => 'camsi', 'CSS0037762' => 'camsi', 'CSS0041181' => 'camsi', 'CSS0042754' => 'camsi', 'CSS0046310' => 'camsi', 'CSS0048191' => 'camsi', 'CSS0048461' => 'camsi', 'CSS0050227' => 'camsi', 'DCAR_011078' => 'dca', 'DCAR_016577' => 'dca', 'DCAR_025386' => 'dca', 'DCAR_027441' => 'dca', 'DCAR_027444' => 'dca', 'DCAR_030992' => 'dca', 'Dinv02260' => 'din', 'Dinv10656' => 'din', 'Dinv13251' => 'din', 'Dinv16688' => 'din', 'Dinv33787' => 'din', 'Duzib084G0084' => 'dzi', 'Duzib147G0027' => 'dzi', 'Duzib187G0269' => 'dzi', 'Duzib251G0569' => 'dzi', 'Duzib251G0860' => 'dzi', 'Duzib264G1151' => 'dzi', 'Duzib268G0325' => 'dzi', 'Duzib268G1322' => 'dzi', 'ECA232G0459' => 'eca', 'ECA233G5865' => 'eca', 'ECA233G6216' => 'eca', 'ECA246G0985' => 'eca', 'EL10Ac5g11058' => 'bvu', 'EL10Ac5g12213' => 'bvu', 'EL10Ac6g13261' => 'bvu', 'Eucgr.B00538' => 'egr', 'Eucgr.B03195' => 'egr', 'Eucgr.B03197' => 'egr', 'Eucgr.I02010' => 'egr', 'FAN02G1120' => 'fan', 'FAN05G0410' => 'fan', 'FAN07G1147' => 'fan', 'FAN08G3559' => 'fan', 'FAN09G2520' => 'fan', 'FAN12G3169' => 'fan', 'FAN13G2310' => 'fan', 'FAN14G2382' => 'fan', 'FAN18G2500' => 'fan', 'FAN22G1706' => 'fan', 'FvH4_4g30750' => 'fve', 'FvH4_4g30751' => 'fve', 'FvH4_5g14550' => 'fve', 'FvH4_6g47910' => 'fve', 'Glyma.01G052800' => 'gma', 'Glyma.02G111400' => 'gma', 'Glyma.04G078200' => 'gma', 'Glyma.04G166200' => 'gma', 'Glyma.06G079600' => 'gma', 'Glyma.06G196300' => 'gma', 'Glyma.09G234700' => 'gma', 'Glyma.13G060700' => 'gma', 'Glyma.14G139566' => 'gma', 'Glyma.14G139632' => 'gma', 'Glyma.17G188600' => 'gma', 'Glyma.19G025800' => 'gma', 'Gohir.A05G368700' => 'ghi', 'Gohir.A07G206500' => 'ghi', 'Gohir.A11G032100' => 'ghi', 'Gohir.A11G070700' => 'ghi', 'Gohir.A12G163300' => 'ghi', 'Gohir.A12G163400' => 'ghi', 'Gohir.A13G085000' => 'ghi', 'Gohir.D04G046600' => 'ghi', 'Gohir.D04G190800' => 'ghi', 'Gohir.D07G212900' => 'ghi', 'Gohir.D11G035500' => 'ghi', 'Gohir.D11G074600' => 'ghi', 'Gohir.D12G166300' => 'ghi', 'Gohir.D12G166400' => 'ghi', 'Gohir.D13G078000' => 'ghi', 'Gorai.001G240900' => 'gra', 'Gorai.007G038300' => 'gra', 'Gorai.007G080100' => 'gra', 'Gorai.008G179100' => 'gra', 'Gorai.008G179200' => 'gra', 'Gorai.012G051800' => 'gra', 'Gorai.012G186200' => 'gra', 'Gorai.013G089200' => 'gra', 'GSVIVG01003220001' => 'vvi', 'GSVIVG01007964001' => 'vvi', 'GSVIVG01011463001' => 'vvi', 'GSVIVG01012494001' => 'vvi', 'GSVIVG01021852001' => 'vvi', 'HanXRQChr02g0047811' => 'han', 'HanXRQChr07g0192211' => 'han', 'HanXRQChr09g0238321' => 'han', 'HanXRQChr11g0337381' => 'han', 'HanXRQChr12g0379191' => 'han', 'HanXRQChr13g0398181' => 'han', 'HanXRQChr15g0487751' => 'han', 'HanXRQChr17g0545931' => 'han', 'Haze_11960' => 'cav', 'Haze_11984' => 'cav', 'Haze_14463' => 'cav', 'Haze_14499' => 'cav', 'Haze_19534' => 'cav', 'Haze_27218' => 'cav', 'Hma1.2p1_0190F.1_g082990' => 'hma', 'Hma1.2p1_0229F.1_g096820' => 'hma', 'Hma1.2p1_0354F.1_g133810' => 'hma', 'Hma1.2p1_0409F.1_g146700' => 'hma', 'Hma1.2p1_1085F.1_g255430' => 'hma', 'HPP92_006479' => 'vpl', 'HPP92_011459' => 'vpl', 'HPP92_011464' => 'vpl', 'HPP92_019485' => 'vpl', 'HPP92_019562' => 'vpl', 'Hund02626' => 'sun', 'Hund09824' => 'sun', 'Hund13180' => 'sun', 'Hund24146' => 'sun', 'Lalb_Chr02g0159161' => 'lal', 'Lalb_Chr04g0255871' => 'lal', 'Lalb_Chr06g0175171' => 'lal', 'Lalb_Chr08g0243421' => 'lal', 'Lalb_Chr10g0098471' => 'lal', 'Lalb_Chr11g0064271' => 'lal', 'Lj1g0007900' => 'lja', 'Lj1g0022621' => 'lja', 'Lj1g0027410' => 'lja', 'Lj2g0005835' => 'lja', 'Lj2g0016475' => 'lja', 'Lj3A1033T53' => 'lonja', 'Lj3C1033T11' => 'lonja', 'Lj3C1033T13' => 'lonja', 'Lj3P350T13' => 'lonja', 'Lj3P369T12' => 'lonja', 'Lj4A113G73' => 'lonja', 'Lj5C108G5' => 'lonja', 'Lj7P753T20' => 'lonja', 'Lj8A428G25' => 'lonja', 'Lj8P426T13' => 'lonja', 'Lj8P463T9' => 'lonja', 'Lj8P501T3' => 'lonja', 'LjContig00102g0021759' => 'lja', 'Lju41A9T71' => 'lonja', 'Lsat_1_v5_gn_1_14341' => 'lsa', 'Lsat_1_v5_gn_3_134840' => 'lsa', 'Lsat_1_v5_gn_3_99721' => 'lsa', 'Lsat_1_v5_gn_4_10620' => 'lsa', 'Lsat_1_v5_gn_4_169761' => 'lsa', 'Lsat_1_v5_gn_5_191001' => 'lsa', 'Lsat_1_v5_gn_6_11281' => 'lsa', 'Manes.01G032500' => 'mes', 'Manes.01G032900' => 'mes', 'Manes.01G034250' => 'mes', 'Manes.01G101200' => 'mes', 'Manes.02G048900' => 'mes', 'Manes.05G106000' => 'mes', 'Manes.05G106100' => 'mes', 'Manes.14G081600' => 'mes', 'Mapoly0005s0052' => 'mpo', 'Mapoly0019s0067' => 'mpo', 'MBI03_g12034_MAGBIO' => 'mbi', 'MBI05_g05760_MAGBIO' => 'mbi', 'MBI17_g19092_MAGBIO' => 'mbi', 'MBI18_g25815_MAGBIO' => 'mbi', 'MCO12G283' => 'mco', 'MCO16G133' => 'mco', 'MD06G1197400' => 'mdo', 'MD09G1055700' => 'mdo', 'MD13G1068400' => 'mdo', 'MD13G1068500' => 'mdo', 'MD14G1204800' => 'mdo', 'MD16G1067200' => 'mdo', 'MD16G1067300' => 'mdo', 'MD17G1053400' => 'mdo', 'Medtr1g009010' => 'mtr', 'Medtr3g037380' => 'mtr', 'Medtr3g109300' => 'mtr', 'Medtr5g042530' => 'mtr', 'Medtr6g012860' => 'mtr', 'Medtr7g011570' => 'mtr', 'MELO3C009852.2' => 'cme', 'MELO3C022009.2' => 'cme', 'MELO3C023882.2' => 'cme', 'MELO3C025923.2' => 'cme', 'Migut.D01763' => 'egut', 'Migut.H02528' => 'egut', 'Migut.K01303' => 'egut', 'Migut.L01246' => 'egut', 'MSTRG.21998' => 'ama', 'MSTRG.23002' => 'ama', 'MSTRG.23245' => 'ama', 'MSTRG.24581' => 'ama', 'MSTRG.2481' => 'ama', 'MSTRG.3337' => 'ama', 'Nitab4.5_0000014g0230' => 'nta', 'Nitab4.5_0000391g0270' => 'nta', 'Nitab4.5_0001195g0020' => 'nta', 'Nitab4.5_0001211g0220' => 'nta', 'Nitab4.5_0001997g0110' => 'nta', 'Nitab4.5_0004690g0050' => 'nta', 'Nitab4.5_0005900g0040' => 'nta', 'Nitab4.5_0013284g0020' => 'nta', 'Nitab4.5_0018146g0010' => 'nta', 'Nitab4.5_0018992g0010' => 'nta', 'Nn3g17325' => 'nnu', 'Nn3g17328' => 'nnu', 'Nn3g21056' => 'nnu', 'Nn4g23274' => 'nnu', 'Oeu010228.1' => 'oeu', 'Oeu018377.2' => 'oeu', 'Oeu023473.1' => 'oeu', 'Oeu045486.2' => 'oeu', 'Oeu052454.1' => 'oeu', 'Oeu055087.1' => 'oeu', 'Os01g0560200' => 'osa', 'Os01g0707300' => 'osa', 'Os03g0576400' => 'osa', 'Os04g0444600' => 'osa', 'Peaxi162Scf00106g00424' => 'pax', 'Peaxi162Scf00187g00114' => 'pax', 'Peaxi162Scf00222g00025' => 'pax', 'Peaxi162Scf00222g00235' => 'pax', 'Peaxi162Scf00274g00346' => 'pax', 'PGR004G1590' => 'pgr', 'PGR062G0004' => 'pgr', 'PGR083G0504' => 'pgr', 'PGR102G0488' => 'pgr', 'PGR102G2715' => 'pgr', 'PGR120G0010' => 'pgr', 'PGR142G1859' => 'pgr', 'PGSC0003DMG400019502' => 'stu', 'PGSC0003DMG400028342' => 'stu', 'PGSC0003DMG400028344' => 'stu', 'Phvul.001G077300' => 'pvu', 'Phvul.002G103100' => 'pvu', 'Phvul.004G031600' => 'pvu', 'Phvul.008G039100' => 'pvu', 'Phvul.009G104000' => 'pvu', 'Phvul.009G185300' => 'pvu', 'Potri.004G115700' => 'ptr', 'Potri.006G277900' => 'ptr', 'Potri.008G042400' => 'ptr', 'Potri.008G091000' => 'ptr', 'Potri.010G164200' => 'ptr', 'Potri.010G164300' => 'ptr', 'Potri.013G020300' => 'ptr', 'Potri.017G087700' => 'ptr', 'Pp3c11_5240' => 'ppa', 'Pp3c17_17260' => 'ppa', 'Pp3c1_4490' => 'ppa', 'Pp3c2_9440' => 'ppa', 'Pp3c3_1240' => 'ppa', 'Pp3c4_27440' => 'ppa', 'Pp3c7_23690' => 'ppa', 'PRCOL_00002322' => 'pco', 'PRCOL_00005265' => 'pco', 'Prupe.1G279400' => 'ppe', 'Prupe.1G279500' => 'ppe', 'Prupe.2G081400' => 'ppe', 'Prupe.2G081800' => 'ppe', 'Prupe.3G128000' => 'ppe', 'Prupe.3G263300' => 'ppe', 'Prupe.5G198100' => 'ppe', 'Prupe.7G035200' => 'ppe', 'Prupe.8G010100' => 'ppe', 'Prupe.8G029500' => 'ppe', 'Prupe.8G055900' => 'ppe', 'Psat0s2030g0080' => 'psa', 'Psat1g070440' => 'psa', 'Psat1g105840' => 'psa', 'Psat2g126400' => 'psa', 'Psat3g199440' => 'psa', 'Psat5g199400' => 'psa', 'Psat6g006080' => 'psa', 'Psat7g036920' => 'psa', 'PSO017G2982' => 'pso', 'PSO017G6141' => 'pso', 'PSO063G1284' => 'pso', 'PSO063G4746' => 'pso', 'PSO198G0119' => 'pso', 'PSO478G0268' => 'pso', 'PSO478G4939' => 'pso', 'QL02p084884' => 'qlo', 'QL03p069708' => 'qlo', 'QL03p069715' => 'qlo', 'QL10p017679' => 'qlo', 'RcHm_v2.0_Chr2g0167111' => 'rch', 'RcHm_v2.0_Chr4g0439141' => 'rch', 'RcHm_v2.0_Chr4g0439151' => 'rch', 'RcHm_v2.0_Chr6g0255431' => 'rch', 'RcHm_v2.0_Chr7g0182011' => 'rch', 'RcHm_v2.0_Chr7g0182061' => 'rch', 'Rhsim02G0180600' => 'rsi', 'Rhsim08G0071700' => 'rsi', 'Rhsim12G0078800' => 'rsi', 'Rhsim12G0133000' => 'rsi', 'Sabra04G0068000' => 'sbr', 'Sabra06G0215500' => 'sbr', 'Sabra08G0029200' => 'sbr', 'Sabra10G0124700' => 'sbr', 'Sabra13G0022800' => 'sbr', 'Sabra17G0077500' => 'sbr', 'SalBow1G0946' => 'sbo', 'SalBow1G1663' => 'sbo', 'SalBow1G2878' => 'sbo', 'SalBow1G3548' => 'sbo', 'SalBow1G3689' => 'sbo', 'SalBow1G6307' => 'sbo', 'SalBow1G6727' => 'sbo', 'SalBow2G0090' => 'sbo', 'SalBow5G5742' => 'sbo', 'SalBow6G0052' => 'sbo', 'SalBow7G3661' => 'sbo', 'SalBow8G3215' => 'sbo', 'Sc06g0009770' => 'sci', 'Sc10g0003410' => 'sci', 'Sc11g0002150' => 'sci', 'Sc14g0006130' => 'sci', 'Sed0000455' => 'sed', 'Sed0001370' => 'sed', 'Sed0007103' => 'sed', 'Sed0010623' => 'sed', 'Sed0023454' => 'sed', 'Sed0023648' => 'sed', 'Sed0026989' => 'sed', 'SEGI_12193' => 'sgi', 'SEGI_16733' => 'sgi', 'SEGI_41158' => 'sgi', 'SGA_v2.0_scaffold146G36266' => 'sas', 'SGA_v2.0_scaffold236G43760' => 'sas', 'SGA_v2.0_scaffold30G12560' => 'sas', 'SGA_v2.0_scaffold3470G54345' => 'sas', 'SGA_v2.0_scaffold455G51911' => 'sas', 'SGA_v2.0_scaffold521G52699' => 'sas', 'SGA_v2.0_scaffold5468G54644' => 'sas', 'SGA_v2.0_scaffold5492G54646' => 'sas', 'SGA_v2.0_scaffold5492G54647' => 'sas', 'SGA_v2.0_scaffold674G53433' => 'sas', 'SGA_v2.0_scaffold693G53461' => 'sas', 'SHI08406' => 'shi', 'SHI41350' => 'shi', 'SHI41351' => 'shi', 'SHI41668' => 'shi', 'SHI46681' => 'shi', 'SHI46682' => 'shi', 'SHI49429' => 'shi', 'SHI49430' => 'shi', 'SHI51049' => 'shi', 'SMO117G0023' => 'smo', 'SMO364G0070' => 'smo', 'SMO364G0403' => 'smo', 'Solyc03g115760.3' => 'sly', 'Solyc05g013030.1' => 'sly', 'Solyc05g013050.3' => 'sly', 'Sopen03g034740' => 'spe', 'Sopen05g007800' => 'spe', 'Sopen05g007820' => 'spe', 'Sp1g22140' => 'spa', 'Sp1g25080' => 'spa', 'Sp2g17740' => 'spa', 'Sp5g24520' => 'spa', 'Sp7g02450' => 'spa', 'TAR371G0661' => 'tar', 'TAR374G0692' => 'tar', 'TAR374G1748' => 'tar', 'TAR622G0509' => 'tar', 'TAR622G0831' => 'tar', 'TAR622G1444' => 'tar', 'THA.LOC104805482' => 'tha', 'THA.LOC104813526' => 'tha', 'THA.LOC104817802' => 'tha', 'THA.LOC104822906' => 'tha', 'THA.LOC104823052' => 'tha', 'Thecc.02G339600' => 'tca', 'Thecc.02G339800' => 'tca', 'Thecc.03G093800' => 'tca', 'Thecc.04G087500' => 'tca', 'Thecc.09G003600' => 'tca', 'Thhalv10004886m.g' => 'esa', 'Thhalv10007736m.g' => 'esa', 'Thhalv10008719m.g' => 'esa', 'Thhalv10019111m.g' => 'esa', 'Thhalv10027921m.g' => 'esa', 'TPR.G12201' => 'tpr', 'TPR.G1331' => 'tpr', 'TPR.G19950' => 'tpr', 'TPR.G26190' => 'tpr', 'TPR.G39002' => 'tpr', 'TWI32G0754' => 'twi', 'TWI34G0462' => 'twi', 'TWI60G1196' => 'twi', 'TWI63G1812' => 'twi', 'TWI75G0336' => 'twi', 'unitig_22.g6904' => 'ugi', 'unitig_699.g19914' => 'ugi', 'unitig_736.g22236' => 'ugi', 'unitig_748.g8612' => 'ugi', 'unitig_8.g3457' => 'ugi', 'unitig_899.g14980' => 'ugi', 'vmacro01342' => 'vma', 'vmacro08395' => 'vma', 'vmacro16351' => 'vma', 'vmacro18174' => 'vma', 'VMungo0464G1658' => 'vmu', 'VMungo0647G0189' => 'vmu', 'VMungo1215G1591' => 'vmu', 'VMungo1309G0176' => 'vmu', 'VMungo1309G0761' => 'vmu', 'VMungo1383G0209' => 'vmu', 'Zm00001eb019070' => 'zma', 'Zm00001eb019080' => 'zma', 'Zm00001eb081870' => 'zma', 'Zm00001eb081880' => 'zma', 'Zm00001eb116040' => 'zma', 'Zm00001eb135810' => 'zma', 'Zm00001eb155310' => 'zma', 'Zm00001eb342470' => 'zma', 'Zm00001eb356870' => 'zma', 'Zm00001eb361180' => 'zma' ) $gf_id = 'HOM05D000944' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000944' ) $data_identifier = 'HOM05D000944' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 24, 'ath' => (int) 5, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 13, 'bca' => (int) 18, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 6, 'din' => (int) 5, 'dzi' => (int) 8, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 13, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 3, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 11, 'psa' => (int) 8, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 12, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 11, 'shi' => (int) 9, 'smo' => (int) 3, 'sly' => (int) 3, 'spe' => (int) 3, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb361180' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1